- Department of Medical Biology
- Department of Human Anatomy, Histology and Embryology
- Section of Anatomy
- Section of Histology
- Department of Physiology
- Department of Pharmacology and Clinical pharmacology
- Department of Pathophysiology
- Department of General and Clinical pathology
- Department of Forensic Medicine and Deontology
- Department of Propedeutics of Internal Diseases
- I-st Department of Internal Diseases
- II-nd Department of Internal Diseases
- Department of Occupational Diseases, Clinical Allergology and Toxicology
- Department of Endocrinology
- Department of Propedeutics of Surgical Diseases
- Section of General Surgery
- Section of Pediatric surgery
- Section of Plastic, Reconstructive and Aesthetic Surgery and Thermal Trauma
- Section of Dermatology and Venereology
- Department of Cardiovascular Surgery
- Department of Special Surgery
- Department of Neurosurgery
- Department of Anaesthesiology and Intensive Care Medicine
- Department of Urology and General Medicine
- Department of Orthopedics and Traumatology
- Department of Medical microbiology and immunology „Prof. Dr. Elissay Yanev”
- Department of Psychiatry and Medical Psychology
- Department of Dermatology and Venerology
- Department of Ophthalmology
- Department of Neurology
- Department of Infectious Diseases, Parasitology and Tropical medicine
- Department of Diagnostic Imaging
- Department of Obstetrics and Gynaecology
- Department of Pediatrics „Prof. Dr. Ivan Andreev”
- Department of Medical Genetics
- Department of Physical and Rehabilitation Medicine
- Department of Otorhinolaryngology
- Department of Clinical Oncology
- Department of Clinical Laboratory